STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000733925_04019Unannotated protein. (311 aa)    
Predicted Functional Partners:
GCA_000733925_01017
Unannotated protein.
  
     0.571
efp
Unannotated protein; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
  
 0.535
GCA_000733925_04116
Unannotated protein.
  
     0.495
GCA_000733925_04281
Unannotated protein.
  
     0.483
recX
Unannotated protein; Modulates RecA activity; Belongs to the RecX family.
       0.482
GCA_000733925_02071
Unannotated protein.
  
     0.473
GCA_000733925_01709
Unannotated protein.
  
     0.441
GCA_000733925_00385
Unannotated protein.
  
    0.435
GCA_000733925_00386
Unannotated protein.
  
     0.434
GCA_000733925_04119
Unannotated protein.
  
     0.434
Your Current Organism:
Arenibacter algicola
NCBI taxonomy Id: 616991
Other names: A. algicola, ATCC BAA-2265, Arenibacter sp. TG409, DSM 24761, strain TG409
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.