STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpmFUnannotated protein; Belongs to the bacterial ribosomal protein bL32 family. (65 aa)    
Predicted Functional Partners:
rpsB
Unannotated protein; Belongs to the universal ribosomal protein uS2 family.
  
 
 0.993
rpsT
Unannotated protein; Binds directly to 16S ribosomal RNA.
  
 
 0.993
rpsF
Unannotated protein; Binds together with S18 to 16S ribosomal RNA.
 
 
 0.993
rpmB
Unannotated protein; Belongs to the bacterial ribosomal protein bL28 family.
 
 
 0.993
GCA_000733925_03448
Unannotated protein.
 
 
 0.993
rpsP
Unannotated protein; Belongs to the bacterial ribosomal protein bS16 family.
  
 
 0.992
rpmG
Unannotated protein; Belongs to the bacterial ribosomal protein bL33 family.
 
 
 0.992
rpsO
Unannotated protein; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
  
 
 0.991
rplS
Unannotated protein; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
  
 
 0.991
rpsR
Unannotated protein; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
 
 
 0.991
Your Current Organism:
Arenibacter algicola
NCBI taxonomy Id: 616991
Other names: A. algicola, ATCC BAA-2265, Arenibacter sp. TG409, DSM 24761, strain TG409
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.