STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hemAUnannotated protein; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). (418 aa)    
Predicted Functional Partners:
hemC
Unannotated protein; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
  
 0.991
hemL
Unannotated protein.
 
 0.989
gltX
Unannotated protein; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.
     
 0.912
hemB
Unannotated protein; Belongs to the ALAD family.
 
  
 0.873
hemE
Unannotated protein; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
 
  
 0.858
GCA_000733925_04672
Unannotated protein.
 
  
 0.854
GCA_000733925_02211
Unannotated protein; Belongs to the precorrin methyltransferase family.
 
  
 0.664
GCA_000733925_03508
Unannotated protein; Belongs to the precorrin methyltransferase family.
 
  
 0.634
GCA_000733925_04675
Unannotated protein.
 
     0.603
GCA_000733925_02120
Unannotated protein.
 
  
 0.535
Your Current Organism:
Arenibacter algicola
NCBI taxonomy Id: 616991
Other names: A. algicola, ATCC BAA-2265, Arenibacter sp. TG409, DSM 24761, strain TG409
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.