STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDB04565.1phenylacetate-CoA ligase. (440 aa)    
Predicted Functional Partners:
SDB04577.1
Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family.
 
 
  0.833
SDB04605.1
Branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
  
    0.797
SDB04619.1
Amino acid/amide ABC transporter membrane protein 1, HAAT family; Belongs to the binding-protein-dependent transport system permease family.
  
    0.777
SDB04595.1
Branched-chain amino acid transport system ATP-binding protein.
  
    0.774
SDB18889.1
phenylacetate-CoA ligase.
  
     0.750
SDB04550.1
Protein of unknown function.
       0.706
SDB18056.1
L-proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family.
   
 0.703
SDB59119.1
acyl-CoA thioesterase.
 
 
 0.647
SDB50099.1
Uncharacterized conserved protein, contains tandem ACT domains.
 
   0.633
SDB18897.1
Phenylacetate-coenzyme A ligase PaaK, adenylate-forming domain family.
  
     0.600
Your Current Organism:
Desulfonatronum thiosulfatophilum
NCBI taxonomy Id: 617002
Other names: D. thiosulfatophilum, DSM 21338, Desulfonatronum sp. AHT30, Desulfonatronum sp. ASO4-2, Desulfonatronum thiosulfatophilum Sorokin et al. 2011, UNIQEM U757, strain ASO4-2
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