STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDB07868.1Hypothetical protein. (251 aa)    
Predicted Functional Partners:
SDB07878.1
Nickel transport protein.
 
   
 0.925
SDB07889.1
Cobalt/nickel transport system permease protein.
 
     0.901
SDB07897.1
Cobalt/nickel transport system permease protein.
 
   
 0.900
SDB36185.1
Cobalt/nickel transport system permease protein.
 
   
 0.778
SDB08024.1
Cobalt/nickel transport system ATP-binding protein; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.
 
     0.717
SDB40504.1
Cobalt/nickel transport system permease protein.
 
     0.620
SDB20753.1
Hypothetical protein.
  
     0.508
SDB40479.1
Cobalt/nickel transport system permease protein.
 
   
 0.444
SDB07858.1
L-lysine 2,3-aminomutase.
       0.422
SDB41456.1
Cobalt/nickel transport protein.
 
   
 0.420
Your Current Organism:
Desulfonatronum thiosulfatophilum
NCBI taxonomy Id: 617002
Other names: D. thiosulfatophilum, DSM 21338, Desulfonatronum sp. AHT30, Desulfonatronum sp. ASO4-2, Desulfonatronum thiosulfatophilum Sorokin et al. 2011, UNIQEM U757, strain ASO4-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.