STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDB11580.1Predicted arabinose efflux permease, MFS family. (418 aa)    
Predicted Functional Partners:
SDB59596.1
Hypothetical protein.
 
     0.788
SDB11520.1
Hypothetical protein.
 
     0.787
SDB11563.1
Hypothetical protein.
 
     0.784
SDB62008.1
Hypothetical protein.
 
     0.783
SDB14533.1
Chorismate mutase / prephenate dehydratase.
   
 
 0.696
SDB03058.1
Para-aminobenzoate synthetase / 4-amino-4-deoxychorismate lyase.
   
 
 0.673
SDB04394.1
5-methyltetrahydrofolate--homocysteine methyltransferase.
   
 
  0.654
SDB11598.1
CO or xanthine dehydrogenase, Mo-binding subunit.
 
     0.652
hisC-2
Histidinol phosphate aminotransferase apoenzyme; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
 
    0.595
SDB62270.1
Histidinol-phosphate aminotransferase.
 
    0.578
Your Current Organism:
Desulfonatronum thiosulfatophilum
NCBI taxonomy Id: 617002
Other names: D. thiosulfatophilum, DSM 21338, Desulfonatronum sp. AHT30, Desulfonatronum sp. ASO4-2, Desulfonatronum thiosulfatophilum Sorokin et al. 2011, UNIQEM U757, strain ASO4-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.