Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDB13208.1 | SDB13228.1 | SAMN05660653_00646 | SAMN05660653_00647 | Signal peptidase I; Belongs to the peptidase S26 family. | Signal peptidase I; Belongs to the peptidase S26 family. | 0.920 |
SDB13208.1 | bamA | SAMN05660653_00646 | SAMN05660653_01352 | Signal peptidase I; Belongs to the peptidase S26 family. | Beta-barrel assembly machine subunit BamA; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | 0.430 |
SDB13208.1 | bamD | SAMN05660653_00646 | SAMN05660653_00993 | Signal peptidase I; Belongs to the peptidase S26 family. | Beta-barrel assembly machine subunit BamD; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | 0.854 |
SDB13208.1 | lptD | SAMN05660653_00646 | SAMN05660653_00332 | Signal peptidase I; Belongs to the peptidase S26 family. | LPS-assembly protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family. | 0.469 |
SDB13228.1 | SDB13208.1 | SAMN05660653_00647 | SAMN05660653_00646 | Signal peptidase I; Belongs to the peptidase S26 family. | Signal peptidase I; Belongs to the peptidase S26 family. | 0.920 |
SDB13228.1 | bamA | SAMN05660653_00647 | SAMN05660653_01352 | Signal peptidase I; Belongs to the peptidase S26 family. | Beta-barrel assembly machine subunit BamA; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | 0.430 |
SDB13228.1 | bamD | SAMN05660653_00647 | SAMN05660653_00993 | Signal peptidase I; Belongs to the peptidase S26 family. | Beta-barrel assembly machine subunit BamD; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | 0.854 |
SDB20825.1 | SDB20843.1 | SAMN05660653_00994 | SAMN05660653_00995 | Thioredoxin reductase (NADPH). | Thioredoxin; Belongs to the thioredoxin family. | 0.992 |
SDB20825.1 | SDB20895.1 | SAMN05660653_00994 | SAMN05660653_00998 | Thioredoxin reductase (NADPH). | Hypothetical protein. | 0.499 |
SDB20825.1 | bamD | SAMN05660653_00994 | SAMN05660653_00993 | Thioredoxin reductase (NADPH). | Beta-barrel assembly machine subunit BamD; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | 0.793 |
SDB20843.1 | SDB20825.1 | SAMN05660653_00995 | SAMN05660653_00994 | Thioredoxin; Belongs to the thioredoxin family. | Thioredoxin reductase (NADPH). | 0.992 |
SDB20843.1 | SDB20895.1 | SAMN05660653_00995 | SAMN05660653_00998 | Thioredoxin; Belongs to the thioredoxin family. | Hypothetical protein. | 0.517 |
SDB20843.1 | SDB20910.1 | SAMN05660653_00995 | SAMN05660653_00999 | Thioredoxin; Belongs to the thioredoxin family. | Tetratricopeptide repeat-containing protein. | 0.464 |
SDB20843.1 | bamD | SAMN05660653_00995 | SAMN05660653_00993 | Thioredoxin; Belongs to the thioredoxin family. | Beta-barrel assembly machine subunit BamD; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | 0.811 |
SDB20895.1 | SDB20825.1 | SAMN05660653_00998 | SAMN05660653_00994 | Hypothetical protein. | Thioredoxin reductase (NADPH). | 0.499 |
SDB20895.1 | SDB20843.1 | SAMN05660653_00998 | SAMN05660653_00995 | Hypothetical protein. | Thioredoxin; Belongs to the thioredoxin family. | 0.517 |
SDB20895.1 | SDB20910.1 | SAMN05660653_00998 | SAMN05660653_00999 | Hypothetical protein. | Tetratricopeptide repeat-containing protein. | 0.909 |
SDB20895.1 | bamD | SAMN05660653_00998 | SAMN05660653_00993 | Hypothetical protein. | Beta-barrel assembly machine subunit BamD; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | 0.705 |
SDB20895.1 | lptD | SAMN05660653_00998 | SAMN05660653_00332 | Hypothetical protein. | LPS-assembly protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family. | 0.432 |
SDB20910.1 | SDB20843.1 | SAMN05660653_00999 | SAMN05660653_00995 | Tetratricopeptide repeat-containing protein. | Thioredoxin; Belongs to the thioredoxin family. | 0.464 |
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