STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bamDBeta-barrel assembly machine subunit BamD; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. (244 aa)    
Predicted Functional Partners:
bamA
Beta-barrel assembly machine subunit BamA; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
 
 0.971
SDB13208.1
Signal peptidase I; Belongs to the peptidase S26 family.
  
  
 0.854
SDB13228.1
Signal peptidase I; Belongs to the peptidase S26 family.
  
  
 0.854
lptD
LPS-assembly protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
 
  
 0.819
SDB20843.1
Thioredoxin; Belongs to the thioredoxin family.
  
  
 0.811
SDB20825.1
Thioredoxin reductase (NADPH).
       0.793
SDB47280.1
TolB protein.
 
   
 0.716
SDB20895.1
Hypothetical protein.
 
     0.705
SDB47313.1
Cell division and transport-associated protein TolQ.
 
   
 0.671
SDB20910.1
Tetratricopeptide repeat-containing protein.
 
     0.657
Your Current Organism:
Desulfonatronum thiosulfatophilum
NCBI taxonomy Id: 617002
Other names: D. thiosulfatophilum, DSM 21338, Desulfonatronum sp. AHT30, Desulfonatronum sp. ASO4-2, Desulfonatronum thiosulfatophilum Sorokin et al. 2011, UNIQEM U757, strain ASO4-2
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