STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDB34253.1Prepilin-type N-terminal cleavage/methylation domain-containing protein. (125 aa)    
Predicted Functional Partners:
SDB34269.1
Prepilin-type N-terminal cleavage/methylation domain-containing protein.
    
 0.835
SDB02729.1
Type IV pilus assembly protein PilV.
  
  
 0.782
SDB34236.1
Prepilin-type N-terminal cleavage/methylation domain-containing protein.
    
 0.779
SDB34285.1
Hypothetical protein.
       0.773
SDB02687.1
Type IV pilus assembly protein PilY1.
  
  
 0.768
SDB02715.1
Type IV pilus assembly protein PilW.
  
  
 0.751
SDB02703.1
Type IV pilus assembly protein PilX.
  
  
 0.748
SDB34206.1
Hypothetical protein.
       0.639
SDB34302.1
RNA polymerase sigma-70 factor, ECF subfamily.
       0.594
SDB02741.1
Type IV fimbrial biogenesis protein FimT.
  
  
 0.449
Your Current Organism:
Desulfonatronum thiosulfatophilum
NCBI taxonomy Id: 617002
Other names: D. thiosulfatophilum, DSM 21338, Desulfonatronum sp. AHT30, Desulfonatronum sp. ASO4-2, Desulfonatronum thiosulfatophilum Sorokin et al. 2011, UNIQEM U757, strain ASO4-2
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.