STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDB40666.1Hypothetical protein. (123 aa)    
Predicted Functional Partners:
SDB26874.1
Hypothetical protein.
  
     0.705
SDB38163.1
Type I restriction enzyme R protein N terminus (HSDR_N).
  
     0.665
SDB35870.1
NifU-like protein; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
  
  
 0.616
SDB38143.1
Dual specificity phosphatase, catalytic domain.
  
     0.581
SDB26762.1
Uncharacterized conserved protein, contains ATP-grasp and redox domains.
 
     0.580
nifH
Nitrogenase iron protein NifH; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family.
  
  
 0.555
SDB13896.1
Hypothetical protein.
  
     0.550
SDB05357.1
Molybdopterin synthase catalytic subunit.
  
     0.541
SDB05331.1
Hypothetical protein.
  
     0.513
SDB05409.1
Ribosomal protein S12 methylthiotransferase accessory factor.
  
     0.513
Your Current Organism:
Desulfonatronum thiosulfatophilum
NCBI taxonomy Id: 617002
Other names: D. thiosulfatophilum, DSM 21338, Desulfonatronum sp. AHT30, Desulfonatronum sp. ASO4-2, Desulfonatronum thiosulfatophilum Sorokin et al. 2011, UNIQEM U757, strain ASO4-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.