STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDB56995.1Nucleotidyltransferase substrate binding protein, HI0074 family. (141 aa)    
Predicted Functional Partners:
SDB56981.1
Predicted nucleotidyltransferase.
 
   
 0.953
SDB56951.1
Branched-chain amino acid transport system ATP-binding protein.
       0.757
SDB56961.1
Branched-chain amino acid transport system ATP-binding protein.
       0.757
SDB56972.1
Branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
       0.757
SDB57006.1
Branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
       0.752
SDB57016.1
Branched-chain amino acid transport system substrate-binding protein.
       0.752
SDB57353.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
  0.661
SDB17711.1
Malate dehydrogenase (oxaloacetate-decarboxylating).
    
  0.525
SDB09488.1
Predicted transcriptional regulator, contains HTH domain.
 
     0.518
SDB57028.1
Potassium and/or sodium efflux P-type ATPase.
       0.492
Your Current Organism:
Desulfonatronum thiosulfatophilum
NCBI taxonomy Id: 617002
Other names: D. thiosulfatophilum, DSM 21338, Desulfonatronum sp. AHT30, Desulfonatronum sp. ASO4-2, Desulfonatronum thiosulfatophilum Sorokin et al. 2011, UNIQEM U757, strain ASO4-2
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