Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSACIP00000000039Collagen, type II, alpha 1a. (1463 aa)    
Predicted Functional Partners:
ENSACIP00000023023
Integrin beta; Belongs to the integrin beta chain family.
    
 0.886
ENSACIP00000010278
Integrin, alpha 10; Belongs to the integrin alpha chain family.
    
 0.885
ENSACIP00000019197
Integrin, alpha 1; Belongs to the integrin alpha chain family.
    
 0.885
ENSACIP00000026454
Integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor), tandem duplicate 2; Belongs to the integrin alpha chain family.
    
 0.885
ENSACIP00000012306
Integrin beta; Belongs to the integrin beta chain family.
    
 0.884
ENSACIP00000025444
Integrin beta.
    
 0.881
ENSACIP00000019799
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
    
  0.878
ENSACIP00000026289
Integrin beta; Belongs to the integrin beta chain family.
    
  0.877
ENSACIP00000012403
Integrin beta; Belongs to the integrin beta chain family.
    
 0.876
ENSACIP00000012937
Integrin beta; Belongs to the integrin beta chain family.
    
 0.876
Your Current Organism:
Amphilophus citrinellus
NCBI taxonomy Id: 61819
Other names: A. citrinellus, Archocentrus citrinellum, Cichlasoma citrinellum, Herichthys citrinellus, Heros citrinellus, Midas cichlid, red devil, red devil cichlid
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