Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSACIP00000001036ISL LIM homeobox 2a. (359 aa)    
Predicted Functional Partners:
ENSACIP00000009929
LIM homeobox 4.
    
 0.887
LHX3
LIM homeobox 3.
    
 0.887
ENSACIP00000010482
LIM-domain binding 1b.
    
 0.876
ENSACIP00000022556
LIM domain binding 2a.
    
 0.876
ENSACIP00000029076
LIM domain binding 1a.
    
 0.876
ENSACIP00000021621
NK2 homeobox 5.
    
 0.800
ENSACIP00000030408
T-box transcription factor 20.
   
 0.796
ENSACIP00000016124
Zinc finger protein 511.
    
   0.781
ENSACIP00000012484
T-box transcription factor 1.
    
 0.743
ENSACIP00000004665
Isopentenyl-diphosphate delta isomerase 1.
    
   0.734
Your Current Organism:
Amphilophus citrinellus
NCBI taxonomy Id: 61819
Other names: A. citrinellus, Archocentrus citrinellum, Cichlasoma citrinellum, Herichthys citrinellus, Heros citrinellus, Midas cichlid, red devil, red devil cichlid
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