STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSACIP00000001135PDZ domain-containing protein. (99 aa)    
Predicted Functional Partners:
ENSACIP00000003173
Actin-related protein 8; Plays an important role in the functional organization of mitotic chromosomes. Exhibits low basal ATPase activity, and unable to polymerize; Belongs to the actin family. ARP8 subfamily.
    
 0.792
ENSACIP00000001182
ASD2 domain-containing protein.
 
      0.786
ENSACIP00000030379
Actin related protein 5; Belongs to the actin family.
    
 0.741
ENSACIP00000016361
Actin-like 6A; Belongs to the actin family.
   
 0.734
ENSACIP00000020735
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family.
    
 0.731
ENSACIP00000008767
General transcription factor IIH, polypeptide 1.
    
 0.730
ENSACIP00000003382
General transcription factor IIH, polypeptide 3.
    
 0.724
ENSACIP00000000162
Excision repair cross-complementation group 3.
   
 0.721
ENSACIP00000017439
INO80 complex subunit C.
    
 0.714
ENSACIP00000008092
Translocase of outer mitochondrial membrane 20.
    
  0.713
Your Current Organism:
Amphilophus citrinellus
NCBI taxonomy Id: 61819
Other names: A. citrinellus, Archocentrus citrinellum, Cichlasoma citrinellum, Herichthys citrinellus, Heros citrinellus, Midas cichlid, red devil, red devil cichlid
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.