Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ENSACIP00000001204Terminal uridylyl transferase 1, U6 snRNA-specific. (800 aa)    
Predicted Functional Partners:
ENSACIP00000021219
Spliceosome associated factor 3, U4/U6 recycling protein.
    
 
 0.976
ENSACIP00000007142
PRP4 pre-mRNA processing factor 4 homolog (yeast).
    
   0.974
ENSACIP00000008421
PRP31 pre-mRNA processing factor 31 homolog (yeast).
    
 
 0.974
ENSACIP00000021527
LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.
    
   0.974
ENSACIP00000004710
Coiled-coil domain containing 84.
    
   0.973
ENSACIP00000010071
PRP3 pre-mRNA processing factor 3 homolog (yeast).
    
   0.965
ENSACIP00000005802
LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated.
    
   0.945
ENSACIP00000030855
La ribonucleoprotein domain family, member 7.
    
 0.942
ENSACIP00000011979
Cleavage and polyadenylation specificity factor subunit 2.
   
 0.935
LSM4
U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.
    
   0.932
Your Current Organism:
Amphilophus citrinellus
NCBI taxonomy Id: 61819
Other names: A. citrinellus, Archocentrus citrinellum, Cichlasoma citrinellum, Herichthys citrinellus, Heros citrinellus, Midas cichlid, red devil, red devil cichlid
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