ENSACIP00000001208 protein (Amphilophus citrinellus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSACIP00000001208

Splicing factor proline/glutamine-rich. (606 aa)

Predicted Functional Partners:

ENSACIP00000003548

0.828

ENSACIP00000031479

0.779

ENSACIP00000007340

0.751

ENSACIP00000018190

0.751

ENSACIP00000010990

0.739

RANBP2

0.720

ENSACIP00000002105

0.715

ENSACIP00000015424

0.675

ENSACIP00000021220

0.671

ENSACIP00000027167

0.636

Your Current Organism:

Amphilophus citrinellus

NCBI taxonomy Id: 61819
Other names: A. citrinellus, Archocentrus citrinellum, Cichlasoma citrinellum, Herichthys citrinellus, Heros citrinellus, Midas cichlid, red devil, red devil cichlid

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSACIP00000001208	ENSACIP00000002105	ENSACIP00000001208	ENSACIP00000002105	Splicing factor proline/glutamine-rich.	GTP binding protein 6 (putative).	0.715
ENSACIP00000001208	ENSACIP00000003548	ENSACIP00000001208	ENSACIP00000003548	Splicing factor proline/glutamine-rich.	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...]	0.828
ENSACIP00000001208	ENSACIP00000007340	ENSACIP00000001208	ENSACIP00000007340	Splicing factor proline/glutamine-rich.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.751
ENSACIP00000001208	ENSACIP00000010990	ENSACIP00000001208	ENSACIP00000010990	Splicing factor proline/glutamine-rich.	TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.739
ENSACIP00000001208	ENSACIP00000015424	ENSACIP00000001208	ENSACIP00000015424	Splicing factor proline/glutamine-rich.	Heterogeneous nuclear ribonucleoprotein M.	0.675
ENSACIP00000001208	ENSACIP00000018190	ENSACIP00000001208	ENSACIP00000018190	Splicing factor proline/glutamine-rich.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.751
ENSACIP00000001208	ENSACIP00000021220	ENSACIP00000001208	ENSACIP00000021220	Splicing factor proline/glutamine-rich.	DEAH (Asp-Glu-Ala-His) box helicase 9.	0.671
ENSACIP00000001208	ENSACIP00000027167	ENSACIP00000001208	ENSACIP00000027167	Splicing factor proline/glutamine-rich.	Zinc finger CCCH-type containing 18.	0.636
ENSACIP00000001208	ENSACIP00000031479	ENSACIP00000001208	ENSACIP00000031479	Splicing factor proline/glutamine-rich.	CDC5 cell division cycle 5-like (S. pombe).	0.779
ENSACIP00000001208	RANBP2	ENSACIP00000001208	ENSACIP00000001735	Splicing factor proline/glutamine-rich.	RAN binding protein 2.	0.720
ENSACIP00000002105	ENSACIP00000001208	ENSACIP00000002105	ENSACIP00000001208	GTP binding protein 6 (putative).	Splicing factor proline/glutamine-rich.	0.715
ENSACIP00000003548	ENSACIP00000001208	ENSACIP00000003548	ENSACIP00000001208	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...]	Splicing factor proline/glutamine-rich.	0.828
ENSACIP00000003548	ENSACIP00000007340	ENSACIP00000003548	ENSACIP00000007340	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...]	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.758
ENSACIP00000003548	ENSACIP00000010990	ENSACIP00000003548	ENSACIP00000010990	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...]	TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.415
ENSACIP00000003548	ENSACIP00000015424	ENSACIP00000003548	ENSACIP00000015424	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...]	Heterogeneous nuclear ribonucleoprotein M.	0.875
ENSACIP00000003548	ENSACIP00000018190	ENSACIP00000003548	ENSACIP00000018190	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...]	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.758
ENSACIP00000003548	ENSACIP00000021220	ENSACIP00000003548	ENSACIP00000021220	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...]	DEAH (Asp-Glu-Ala-His) box helicase 9.	0.521
ENSACIP00000007340	ENSACIP00000001208	ENSACIP00000007340	ENSACIP00000001208	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	Splicing factor proline/glutamine-rich.	0.751
ENSACIP00000007340	ENSACIP00000003548	ENSACIP00000007340	ENSACIP00000003548	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...]	0.758
ENSACIP00000007340	ENSACIP00000010990	ENSACIP00000007340	ENSACIP00000010990	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.614

page 1 of 4

Server load: low (32%) [HD]

Permalink

Network

Neighborhood

Experiments

Co-occurrence

Databases

Co-expression

Textmining

Fusion

© STRING Consortium 2026

Credits

Access

Info

About