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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSACIP00000001338Proteoglycan 4a. (373 aa)    
Predicted Functional Partners:
ENSACIP00000016154
Ubiquitin-conjugating enzyme E2 variant 1.
   
 
  0.841
ENSACIP00000017021
Phospholipase A2.
     
 0.809
TIMP2
TIMP metallopeptidase inhibitor 2.
    
 0.667
ENSACIP00000002029
TIMP metallopeptidase inhibitor 2b.
    
 0.667
TIMP3
TIMP metallopeptidase inhibitor 3.
    
 0.667
ENSACIP00000024456
TIMP metallopeptidase inhibitor 4, tandem duplicate 1.
    
 0.667
ENSACIP00000003515
Collagen, type XXII, alpha 1.
    
  0.556
ENSACIP00000014337
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
    
 0.538
ENSACIP00000011565
Heparin-binding EGF-like growth factor a.
    
  0.534
ENSACIP00000016270
Platelet-activating factor acetylhydrolase.
     
 0.497
Your Current Organism:
Amphilophus citrinellus
NCBI taxonomy Id: 61819
Other names: A. citrinellus, Archocentrus citrinellum, Cichlasoma citrinellum, Herichthys citrinellus, Heros citrinellus, Midas cichlid, red devil, red devil cichlid
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.