STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSACIP00000001347Usher syndrome 1Ga (autosomal recessive). (471 aa)    
Predicted Functional Partners:
ENSACIP00000027092
Usher syndrome 1C.
   
 0.968
ENSACIP00000005813
Cadherin-related 23.
    
 0.747
ENSACIP00000016928
Myosin VIIAb; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
   
 0.680
ENSACIP00000022243
Myosin VIIAa; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
   
 0.680
ENSACIP00000015076
TNF receptor-associated factor 7.
    
 0.655
ENSACIP00000007886
Uncharacterized protein.
    
 0.651
ENSACIP00000001449
Otopetrin 2.
      
 0.625
ENSACIP00000004254
Transmembrane protein 107.
      
 0.609
ENSACIP00000009538
Adhesion G protein-coupled receptor V1; Belongs to the G-protein coupled receptor 2 family.
    
 
 0.599
ENSACIP00000001574
Uncharacterized protein.
    
  0.585
Your Current Organism:
Amphilophus citrinellus
NCBI taxonomy Id: 61819
Other names: A. citrinellus, Archocentrus citrinellum, Cichlasoma citrinellum, Herichthys citrinellus, Heros citrinellus, Midas cichlid, red devil, red devil cichlid
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