Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ENSACIP00000001406Ubiquitin specific peptidase 39. (518 aa)    
Predicted Functional Partners:
ENSACIP00000023611
Pre-mRNA processing factor 8.
   
 0.993
ENSACIP00000011708
Elongation factor Tu GTP binding domain containing 2.
   
 0.987
ENSACIP00000027090
Small nuclear ribonucleoprotein 40 (U5).
   
 0.984
ENSACIP00000000024
DEAD (Asp-Glu-Ala-Asp) box polypeptide 23; Belongs to the DEAD box helicase family.
   
 0.971
ENSACIP00000008421
PRP31 pre-mRNA processing factor 31 homolog (yeast).
   
 0.968
ENSACIP00000009002
CD2 (cytoplasmic tail) binding protein 2.
    
   0.968
LSM4
U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.
    
 0.962
ENSACIP00000025667
PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).
    
 0.954
ENSACIP00000029292
Small nuclear ribonucleoprotein Sm D2.
    
 0.949
ENSACIP00000005802
LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated.
    
 0.948
Your Current Organism:
Amphilophus citrinellus
NCBI taxonomy Id: 61819
Other names: A. citrinellus, Archocentrus citrinellum, Cichlasoma citrinellum, Herichthys citrinellus, Heros citrinellus, Midas cichlid, red devil, red devil cichlid
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