Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ENSACIP00000001443Ankyrin repeat and zinc finger peptidyl tRNA hydrolase 1. (596 aa)    
Predicted Functional Partners:
NEMF
Nuclear export mediator factor.
   
 0.967
ENSACIP00000018597
Zgc:136908.
   
 0.871
ENSACIP00000026468
Valosin containing protein; Belongs to the AAA ATPase family.
   
 0.871
LTN1
Listerin E3 ubiquitin protein ligase 1.
    
 0.863
SPATA5
Spermatogenesis associated 5.
   
 0.860
ENSACIP00000025718
Spermatogenesis associated 5-like 1.
   
 0.860
ENSACIP00000003115
Ubiquitination factor E4A (UFD2 homolog, yeast).
    
 
 0.814
ENSACIP00000004763
Ubiquitination factor E4B, UFD2 homolog (S. cerevisiae).
    
 
 0.814
EIF6
Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.
    
   0.813
ENSACIP00000002521
Si:dkey-57h18.1.
    
 0.779
Your Current Organism:
Amphilophus citrinellus
NCBI taxonomy Id: 61819
Other names: A. citrinellus, Archocentrus citrinellum, Cichlasoma citrinellum, Herichthys citrinellus, Heros citrinellus, Midas cichlid, red devil, red devil cichlid
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