STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSACIP00000001445PRP18 pre-mRNA processing factor 18 homolog (yeast). (341 aa)    
Predicted Functional Partners:
ENSACIP00000007316
SLU7 homolog, splicing factor.
  
 0.998
ENSACIP00000002273
Small nuclear ribonucleoprotein 200 (U5).
    
 
 0.991
ENSACIP00000031479
CDC5 cell division cycle 5-like (S. pombe).
   
 
 0.991
ENSACIP00000011934
BUD31 homolog.
    
 
 0.987
ENSACIP00000008100
Cell division cycle 40 homolog (S. cerevisiae).
   
 0.979
ENSACIP00000025949
CWC22 spliceosome associated protein homolog.
   
 0.976
ENSACIP00000030632
SYF2 pre-mRNA-splicing factor.
   
 0.972
WDR25
WD repeat domain 25.
   
 0.968
ENSACIP00000000709
DEAH (Asp-Glu-Ala-His) box polypeptide 38.
    
 0.966
ENSACIP00000023611
Pre-mRNA processing factor 8.
    
 
 0.964
Your Current Organism:
Amphilophus citrinellus
NCBI taxonomy Id: 61819
Other names: A. citrinellus, Archocentrus citrinellum, Cichlasoma citrinellum, Herichthys citrinellus, Heros citrinellus, Midas cichlid, red devil, red devil cichlid
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.