Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSACIP000000016155'-3' exoribonuclease 1. (1655 aa)    
Predicted Functional Partners:
ENSACIP00000001860
Uncharacterized protein.
    
 0.999
ENSACIP00000015381
Enhancer of mRNA decapping 4.
    
 
 0.995
ENSACIP00000019439
5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II.
    
 0.989
LSM1
U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.
    
 0.988
ENSACIP00000023860
Uncharacterized protein.
    
 0.978
LSM4
U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.
    
 0.976
ENSACIP00000008342
LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.
    
 0.975
ENSACIP00000021527
LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.
    
 0.975
ENSACIP00000024715
LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated.
    
 0.975
ENSACIP00000007767
DIS3 exosome endoribonuclease and 3'-5' exoribonuclease; Belongs to the RNR ribonuclease family.
   
 0.974
Your Current Organism:
Amphilophus citrinellus
NCBI taxonomy Id: 61819
Other names: A. citrinellus, Archocentrus citrinellum, Cichlasoma citrinellum, Herichthys citrinellus, Heros citrinellus, Midas cichlid, red devil, red devil cichlid
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