Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSACIP00000001659Transformer 2 alpha homolog. (279 aa)    
Predicted Functional Partners:
ENSACIP00000021186
RRM domain-containing protein.
   
 0.986
SRSF3
Serine and arginine rich splicing factor 3.
   
 0.986
ENSACIP00000020272
Serine and arginine rich splicing factor 9.
   
 0.985
ENSACIP00000001889
RRM domain-containing protein.
   
 0.983
ENSACIP00000003287
Uncharacterized protein.
  
 0.983
ENSACIP00000010344
Serine and arginine rich splicing factor 1a.
   
 0.979
ENSACIP00000006214
Serine and arginine rich splicing factor 7a.
   
 0.978
ENSACIP00000012681
Serine and arginine rich splicing factor 7b.
   
 0.978
SRSF4
Serine and arginine rich splicing factor 4.
  
 0.940
ENSACIP00000012307
RRM domain-containing protein.
  
0.933
Your Current Organism:
Amphilophus citrinellus
NCBI taxonomy Id: 61819
Other names: A. citrinellus, Archocentrus citrinellum, Cichlasoma citrinellum, Herichthys citrinellus, Heros citrinellus, Midas cichlid, red devil, red devil cichlid
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