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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSACIP00000001709SMG5 nonsense mediated mRNA decay factor. (1029 aa)    
Predicted Functional Partners:
ENSACIP00000017438
UPF3B regulator of nonsense mediated mRNA decay.
   
 0.975
ENSACIP00000026483
UPF3A regulator of nonsense mediated mRNA decay.
   
 0.973
UPF1
UPF1 RNA helicase and ATPase.
   
 0.939
ENSACIP00000025783
Uncharacterized protein.
   
 0.939
ENSACIP00000016724
SMG6 nonsense mediated mRNA decay factor.
   
0.936
ENSACIP00000019495
SMG7 nonsense mediated mRNA decay factor.
   
0.935
ENSACIP00000031575
SMG1 nonsense mediated mRNA decay associated PI3K related kinase; Belongs to the PI3/PI4-kinase family.
   
 0.914
ENSACIP00000022712
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
    
 0.885
ENSACIP00000022588
Telomerase reverse transcriptase; Telomerase is a ribonucleoprotein enzyme essential for the replication of chromosome termini in most eukaryotes. It elongates telomeres. It is a reverse transcriptase that adds simple sequence repeats to chromosome ends by copying a template sequence within the RNA component of the enzyme.
   
 
 0.879
ENSACIP00000015381
Enhancer of mRNA decapping 4.
   
  
 0.868
Your Current Organism:
Amphilophus citrinellus
NCBI taxonomy Id: 61819
Other names: A. citrinellus, Archocentrus citrinellum, Cichlasoma citrinellum, Herichthys citrinellus, Heros citrinellus, Midas cichlid, red devil, red devil cichlid
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