Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ENSACIP00000001875Matrin-type domain-containing protein. (141 aa)    
Predicted Functional Partners:
ENSACIP00000010099
Zinc finger, matrin-type 2.
   
 0.975
ENSACIP00000008421
PRP31 pre-mRNA processing factor 31 homolog (yeast).
    
 0.972
ENSACIP00000022351
Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.
    
 0.960
ENSACIP00000017571
Microfibril associated protein 1.
   
 0.947
ENSACIP00000025667
PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).
   
 0.946
SMU1
SMU1 DNA replication regulator and spliceosomal factor.
    
 0.935
UBL5
Ubiquitin like 5.
    
 0.927
ENSACIP00000002273
Small nuclear ribonucleoprotein 200 (U5).
    
 
 0.926
ENSACIP00000021527
LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.
    
 0.926
ENSACIP00000028848
Uncharacterized protein.
    
  0.926
Your Current Organism:
Amphilophus citrinellus
NCBI taxonomy Id: 61819
Other names: A. citrinellus, Archocentrus citrinellum, Cichlasoma citrinellum, Herichthys citrinellus, Heros citrinellus, Midas cichlid, red devil, red devil cichlid
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