STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSACIP00000001978Collagen, type VIII, alpha 1b. (718 aa)    
Predicted Functional Partners:
ENSACIP00000001574
Uncharacterized protein.
    
  0.724
ENSACIP00000024340
Uncharacterized protein.
    
  0.724
ENSACIP00000022135
C1q domain-containing protein.
   
 
0.630
ENSACIP00000016639
Collagen IV NC1 domain-containing protein.
 
 
 
  0.626
ENSACIP00000013754
Collagen, type VI, alpha 1.
  
0.606
ENSACIP00000003588
Collagen, type VIII, alpha 2.
  
  
 
0.591
ENSACIP00000002045
Uncharacterized protein.
 
 
 0.578
ENSACIP00000019236
DNA ligase.
    
 0.574
ENSACIP00000016103
DUF4062 domain-containing protein.
    
 0.570
ENSACIP00000013606
Collagen, type VI, alpha 2.
  
0.566
Your Current Organism:
Amphilophus citrinellus
NCBI taxonomy Id: 61819
Other names: A. citrinellus, Archocentrus citrinellum, Cichlasoma citrinellum, Herichthys citrinellus, Heros citrinellus, Midas cichlid, red devil, red devil cichlid
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.