STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSACIP00000001978Collagen, type VIII, alpha 1b. (718 aa)    
Predicted Functional Partners:
ENSACIP00000013754
Collagen, type VI, alpha 1.
  
0.742
ENSACIP00000001574
Uncharacterized protein.
    
  0.724
ENSACIP00000024340
Uncharacterized protein.
    
  0.724
ENSACIP00000002045
Uncharacterized protein.
 
 
 0.646
ENSACIP00000013606
Collagen, type VI, alpha 2.
  
0.637
ENSACIP00000003588
Collagen, type VIII, alpha 2.
     
  0.613
ENSACIP00000016639
Collagen IV NC1 domain-containing protein.
 
      0.599
ENSACIP00000025444
Integrin beta.
    
 0.590
ENSACIP00000026289
Integrin beta; Belongs to the integrin beta chain family.
    
 0.584
ENSACIP00000002006
VWFA domain-containing protein.
   
 0.583
Your Current Organism:
Amphilophus citrinellus
NCBI taxonomy Id: 61819
Other names: A. citrinellus, Archocentrus citrinellum, Cichlasoma citrinellum, Herichthys citrinellus, Heros citrinellus, Midas cichlid, red devil, red devil cichlid
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