Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ENSACIP00000002245Small RNA binding exonuclease protection factor La. (381 aa)    
Predicted Functional Partners:
ENSACIP00000030855
La ribonucleoprotein domain family, member 7.
   
 
 0.953
ENSACIP00000002877
TROVE domain-containing protein.
    
 
 0.928
ENSACIP00000013161
Ro60, Y RNA binding protein.
    
 
 0.928
ENSACIP00000014479
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
   
 
 0.873
ENSACIP00000023987
Nucleolar protein interacting with the FHA domain of MKI67.
   
 
 0.866
ENSACIP00000011806
Zinc finger CCCH-type containing 15.
   
    0.858
ENSACIP00000028120
NOP58 ribonucleoprotein homolog (yeast).
   
 
 0.853
ENSACIP00000016982
Nucleolin.
   
 
 0.847
ENSACIP00000028313
Uncharacterized protein.
   
 
 0.847
ENSACIP00000024626
SERPINE1 mRNA binding protein 1b.
   
 
 0.839
Your Current Organism:
Amphilophus citrinellus
NCBI taxonomy Id: 61819
Other names: A. citrinellus, Archocentrus citrinellum, Cichlasoma citrinellum, Herichthys citrinellus, Heros citrinellus, Midas cichlid, red devil, red devil cichlid
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