Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ENSACIP00000003175Im:7138535. (343 aa)    
Predicted Functional Partners:
RTCB
RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs.
    
 0.934
ENSACIP00000022436
DEAD (Asp-Glu-Ala-Asp) box helicase 1.
   
 
 0.881
ENSACIP00000024017
RNA transcription, translation and transport factor.
    
 
 0.862
ENSACIP00000012241
Nuclear FMR1 interacting protein 2.
    
 
 0.779
ENSACIP00000019355
Family with sequence similarity 98 member B.
  
 
 
0.615
ENSACIP00000013389
Uncharacterized protein.
  
  
 
0.565
ENSACIP00000029450
Si:dkeyp-118h3.6.
     
 0.565
ENSACIP00000006359
Ataxin 2.
    
 
 0.551
ENSACIP00000018954
LsmAD domain-containing protein.
    
 
 0.551
ENSACIP00000031630
Ataxin 2-like.
    
 
 0.551
Your Current Organism:
Amphilophus citrinellus
NCBI taxonomy Id: 61819
Other names: A. citrinellus, Archocentrus citrinellum, Cichlasoma citrinellum, Herichthys citrinellus, Heros citrinellus, Midas cichlid, red devil, red devil cichlid
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