STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSACIP00000003396BMS1 ribosome biogenesis factor. (1224 aa)    
Predicted Functional Partners:
UTP14C
UTP14C small subunit processome component.
   
 
 0.999
ENSACIP00000005468
UTP6 small subunit processome component.
   
 
 0.999
ENSACIP00000006797
U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family.
   
 
 0.999
ENSACIP00000007348
WD repeat domain 75.
   
 0.999
ENSACIP00000008255
Uncharacterized protein.
   
 
 0.999
ENSACIP00000008987
WD repeat domain 3.
   
 
 0.999
ENSACIP00000009554
Transducin (beta)-like 3.
   
 
 0.999
ENSACIP00000010095
WD repeat domain 46.
   
 
 0.999
ENSACIP00000010320
UTP20 small subunit processome component.
   
 
 0.999
ENSACIP00000013848
IMP U3 small nucleolar ribonucleoprotein 4.
   
 
 0.999
Your Current Organism:
Amphilophus citrinellus
NCBI taxonomy Id: 61819
Other names: A. citrinellus, Archocentrus citrinellum, Cichlasoma citrinellum, Herichthys citrinellus, Heros citrinellus, Midas cichlid, red devil, red devil cichlid
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.