Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSACIP00000004076Small nuclear ribonucleoprotein 35 (U11/U12). (212 aa)    
Predicted Functional Partners:
ENSACIP00000002518
Small nuclear ribonucleoprotein 48 (U11/U12).
   
 0.990
ENSACIP00000008343
Small nuclear ribonucleoprotein G.
   
 0.988
ENSACIP00000029292
Small nuclear ribonucleoprotein Sm D2.
   
 0.988
SNRPC
U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...]
   
 0.982
ENSACIP00000003252
Programmed cell death 7.
   
 0.981
ENSACIP00000020394
Zinc finger, matrin-type 5.
   
 0.981
ENSACIP00000025263
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.981
ENSACIP00000030092
Small nuclear ribonucleoprotein 25.
    
 0.980
ENSACIP00000011470
Small nuclear ribonucleoprotein Sm D3.
   
 0.979
ENSACIP00000027175
RNA-binding region (RNP1, RRM) containing 3.
   
 0.973
Your Current Organism:
Amphilophus citrinellus
NCBI taxonomy Id: 61819
Other names: A. citrinellus, Archocentrus citrinellum, Cichlasoma citrinellum, Herichthys citrinellus, Heros citrinellus, Midas cichlid, red devil, red devil cichlid
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