Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ENSACIP00000004656Family with sequence similarity 168 member A. (233 aa)    
Predicted Functional Partners:
ENSACIP00000005938
E3 ubiquitin-protein ligase.
    
   0.845
ENSACIP00000015501
E3 ubiquitin-protein ligase.
    
   0.845
ENSACIP00000015644
Polymerase (RNA) II (DNA directed) polypeptide C.
    
   0.751
ENSACIP00000008194
ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.
    
   0.737
ENSACIP00000009258
Polymerase (RNA) II (DNA directed) polypeptide G-like.
    
   0.737
ENSACIP00000016896
Ring finger and CCCH-type domains 1b.
    
   0.737
POLR2B
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.727
ENSACIP00000027844
RPOL4c domain-containing protein.
    
   0.727
ENSACIP00000019271
E3 ubiquitin-protein ligase.
    
   0.681
ENSACIP00000021170
E3 ubiquitin-protein ligase.
    
   0.681
Your Current Organism:
Amphilophus citrinellus
NCBI taxonomy Id: 61819
Other names: A. citrinellus, Archocentrus citrinellum, Cichlasoma citrinellum, Herichthys citrinellus, Heros citrinellus, Midas cichlid, red devil, red devil cichlid
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