ENSACIP00000004822 protein (Amphilophus citrinellus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSACIP00000004822

RNA binding protein fox-1 homolog 3; RNA-binding protein that regulates alternative splicing events. (356 aa)

Predicted Functional Partners:

ENSACIP00000017565

0.856

ENSACIP00000013924

0.816

ENSACIP00000000574

0.785

ENSACIP00000023463

0.783

SNRPC

0.778

ENSACIP00000000014

0.776

RBM38

0.774

ENSACIP00000020138

0.760

RBPMS

0.727

ENSACIP00000021093

0.723

Your Current Organism:

Amphilophus citrinellus

NCBI taxonomy Id: 61819
Other names: A. citrinellus, Archocentrus citrinellum, Cichlasoma citrinellum, Herichthys citrinellus, Heros citrinellus, Midas cichlid, red devil, red devil cichlid

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSACIP00000000014	ENSACIP00000004822	ENSACIP00000000014	ENSACIP00000004822	RRM domain-containing protein.	RNA binding protein fox-1 homolog 3; RNA-binding protein that regulates alternative splicing events.	0.776
ENSACIP00000000014	ENSACIP00000023463	ENSACIP00000000014	ENSACIP00000023463	RRM domain-containing protein.	ELAV-like protein; Belongs to the RRM elav family.	0.558
ENSACIP00000000574	ENSACIP00000004822	ENSACIP00000000574	ENSACIP00000004822	ELAV-like protein; Belongs to the RRM elav family.	RNA binding protein fox-1 homolog 3; RNA-binding protein that regulates alternative splicing events.	0.785
ENSACIP00000000574	ENSACIP00000013924	ENSACIP00000000574	ENSACIP00000013924	ELAV-like protein; Belongs to the RRM elav family.	RNA binding fox-1 homolog 3b.	0.609
ENSACIP00000000574	ENSACIP00000020138	ENSACIP00000000574	ENSACIP00000020138	ELAV-like protein; Belongs to the RRM elav family.	RNA binding motif protein 24b.	0.489
ENSACIP00000000574	RBM38	ENSACIP00000000574	ENSACIP00000016200	ELAV-like protein; Belongs to the RRM elav family.	RNA binding motif protein 38.	0.562
ENSACIP00000004822	ENSACIP00000000014	ENSACIP00000004822	ENSACIP00000000014	RNA binding protein fox-1 homolog 3; RNA-binding protein that regulates alternative splicing events.	RRM domain-containing protein.	0.776
ENSACIP00000004822	ENSACIP00000000574	ENSACIP00000004822	ENSACIP00000000574	RNA binding protein fox-1 homolog 3; RNA-binding protein that regulates alternative splicing events.	ELAV-like protein; Belongs to the RRM elav family.	0.785
ENSACIP00000004822	ENSACIP00000013924	ENSACIP00000004822	ENSACIP00000013924	RNA binding protein fox-1 homolog 3; RNA-binding protein that regulates alternative splicing events.	RNA binding fox-1 homolog 3b.	0.816
ENSACIP00000004822	ENSACIP00000017565	ENSACIP00000004822	ENSACIP00000017565	RNA binding protein fox-1 homolog 3; RNA-binding protein that regulates alternative splicing events.	RNA binding protein, mRNA processing factor 2b.	0.856
ENSACIP00000004822	ENSACIP00000020138	ENSACIP00000004822	ENSACIP00000020138	RNA binding protein fox-1 homolog 3; RNA-binding protein that regulates alternative splicing events.	RNA binding motif protein 24b.	0.760
ENSACIP00000004822	ENSACIP00000021093	ENSACIP00000004822	ENSACIP00000021093	RNA binding protein fox-1 homolog 3; RNA-binding protein that regulates alternative splicing events.	RNA binding motif protein 22.	0.723
ENSACIP00000004822	ENSACIP00000023463	ENSACIP00000004822	ENSACIP00000023463	RNA binding protein fox-1 homolog 3; RNA-binding protein that regulates alternative splicing events.	ELAV-like protein; Belongs to the RRM elav family.	0.783
ENSACIP00000004822	RBM38	ENSACIP00000004822	ENSACIP00000016200	RNA binding protein fox-1 homolog 3; RNA-binding protein that regulates alternative splicing events.	RNA binding motif protein 38.	0.774
ENSACIP00000004822	RBPMS	ENSACIP00000004822	ENSACIP00000014662	RNA binding protein fox-1 homolog 3; RNA-binding protein that regulates alternative splicing events.	RNA binding protein, mRNA processing factor.	0.727
ENSACIP00000004822	SNRPC	ENSACIP00000004822	ENSACIP00000013964	RNA binding protein fox-1 homolog 3; RNA-binding protein that regulates alternative splicing events.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...]	0.778
ENSACIP00000013924	ENSACIP00000000574	ENSACIP00000013924	ENSACIP00000000574	RNA binding fox-1 homolog 3b.	ELAV-like protein; Belongs to the RRM elav family.	0.609
ENSACIP00000013924	ENSACIP00000004822	ENSACIP00000013924	ENSACIP00000004822	RNA binding fox-1 homolog 3b.	RNA binding protein fox-1 homolog 3; RNA-binding protein that regulates alternative splicing events.	0.816
ENSACIP00000013924	ENSACIP00000020138	ENSACIP00000013924	ENSACIP00000020138	RNA binding fox-1 homolog 3b.	RNA binding motif protein 24b.	0.408
ENSACIP00000013924	ENSACIP00000023463	ENSACIP00000013924	ENSACIP00000023463	RNA binding fox-1 homolog 3b.	ELAV-like protein; Belongs to the RRM elav family.	0.603

page 1 of 3

Server load: low (18%) [HD]

Permalink

Network

Co-occurrence

Experiments

Co-expression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2026

Credits

Access

Info

About