Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSACIP00000005065Matrix metallopeptidase 9. (677 aa)    
Predicted Functional Partners:
ENSACIP00000009622
Kit ligand a.
     
 0.981
TIMP3
TIMP metallopeptidase inhibitor 3.
   
 0.976
TIMP2
TIMP metallopeptidase inhibitor 2.
   
 0.965
ENSACIP00000002029
TIMP metallopeptidase inhibitor 2b.
   
 0.959
ENSACIP00000020128
Nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100).
   
 0.958
ENSACIP00000030291
Nuclear factor of kappa light polypeptide gene enhancer in B-cells 1.
   
 0.958
ENSACIP00000022828
Vascular endothelial growth factor Ab; Belongs to the PDGF/VEGF growth factor family.
     
 0.948
ENSACIP00000005078
Endothelin 1.
     
 0.941
REL
REL proto-oncogene, NF-kB subunit.
    
 0.938
ENSACIP00000017482
V-rel avian reticuloendotheliosis viral oncogene homolog B.
    
 0.938
Your Current Organism:
Amphilophus citrinellus
NCBI taxonomy Id: 61819
Other names: A. citrinellus, Archocentrus citrinellum, Cichlasoma citrinellum, Herichthys citrinellus, Heros citrinellus, Midas cichlid, red devil, red devil cichlid
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