Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
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[Homology]
Score
ENSACIP00000005103RAB3 GTPase activating protein subunit 1. (792 aa)    
Predicted Functional Partners:
ENSACIP00000006086
RAB3 GTPase activating protein subunit 2 (non-catalytic).
   
 0.996
ENSACIP00000006096
Uncharacterized protein.
   
 0.996
ENSACIP00000010358
RAB18B, member RAS oncogene family.
    
 0.876
ENSACIP00000012328
RAB18A, member RAS oncogene family.
    
 0.876
ENSACIP00000000729
Dmx-like 2.
   
 
 0.863
DMXL1
Dmx like 1.
   
 
 0.863
ENSACIP00000017944
VAMP (vesicle-associated membrane protein)-associated protein B and C.
    
 
 0.860
WDR7
WD repeat domain 7.
    
 
 0.851
ENSACIP00000031332
Solute carrier family 38 member 6.
   
    0.822
ENSACIP00000028192
Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.
   
 
 0.797
Your Current Organism:
Amphilophus citrinellus
NCBI taxonomy Id: 61819
Other names: A. citrinellus, Archocentrus citrinellum, Cichlasoma citrinellum, Herichthys citrinellus, Heros citrinellus, Midas cichlid, red devil, red devil cichlid
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