Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ENSACIP00000005316Chromodomain helicase DNA binding protein 9. (2878 aa)    
Predicted Functional Partners:
ENSACIP00000025985
Catenin (cadherin-associated protein), beta 1.
   
 0.933
ENSACIP00000020724
Uncharacterized protein.
   
 0.887
ENSACIP00000000975
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 
 0.818
ENSACIP00000008327
FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]
    
 
 0.798
ENSACIP00000012372
SPT16 homolog, facilitates chromatin remodeling subunit.
    
 
 0.796
ENSACIP00000023502
RTF1 homolog, Paf1/RNA polymerase II complex component.
   
 
 0.796
ENSACIP00000017789
Ash2 like, histone lysine methyltransferase complex subunit.
    
 
 0.761
ENSACIP00000013550
Retinoblastoma binding protein 5.
    
 
 0.751
ENSACIP00000019275
Uncharacterized protein.
  
 
 0.726
ENSACIP00000015644
Polymerase (RNA) II (DNA directed) polypeptide C.
   
 0.719
Your Current Organism:
Amphilophus citrinellus
NCBI taxonomy Id: 61819
Other names: A. citrinellus, Archocentrus citrinellum, Cichlasoma citrinellum, Herichthys citrinellus, Heros citrinellus, Midas cichlid, red devil, red devil cichlid
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