Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ENSACIP00000005329Transcription elongation factor A (SII), 1. (343 aa)    
Predicted Functional Partners:
POLR2E
RNA polymerase II subunit E.
   
 0.961
ENSACIP00000021259
Uncharacterized protein.
  
 0.958
ENSACIP00000015663
SPT4 homolog, DSIF elongation factor subunit.
   
 0.957
ENSACIP00000029251
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
   
 0.957
ENSACIP00000015644
Polymerase (RNA) II (DNA directed) polypeptide C.
   
 0.953
ENSACIP00000016898
Info polymerase (RNA) II (DNA directed) polypeptide H.
   
 0.953
POLR2J2
RNA polymerase II subunit J2.
   
 0.953
ENSACIP00000009258
Polymerase (RNA) II (DNA directed) polypeptide G-like.
    
 0.952
ENSACIP00000007010
Polymerase (RNA) II (DNA directed) polypeptide L.
   
 0.947
ENSACIP00000027506
Transcription elongation factor SPT5.
    
 0.944
Your Current Organism:
Amphilophus citrinellus
NCBI taxonomy Id: 61819
Other names: A. citrinellus, Archocentrus citrinellum, Cichlasoma citrinellum, Herichthys citrinellus, Heros citrinellus, Midas cichlid, red devil, red devil cichlid
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