STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EWB00_003451U5 small nuclear ribonucleo. (294 aa)    
Predicted Functional Partners:
EWB00_008984
U5 small nuclear ribonucleoprotein component isoform 2.
   
 0.949
EWB00_006057
Pre-mRNA-processing-splicing factor 8.
   
 0.946
EWB00_008836
Pre-mRNA-processing factor 6.
   
 0.943
Sm-D2
Small nuclear ribonucleoprotein Sm D2.
   
 0.930
snRNP-F
Small nuclear ribonucleoprotein F.
   
  0.918
EWB00_003908
Putative ATP-dependent RNA helicase DDX23 isoform 1; Belongs to the DEAD box helicase family.
    
 0.914
EWB00_009396
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
   
 0.898
Sm-G
Small nuclear ribonucleoprotein G.
   
  0.885
EWB00_011170
Small nuclear ribonucleoprotein Sm D3.
   
 0.877
EWB00_009574
Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.
    
 0.842
Your Current Organism:
Schistosoma japonicum
NCBI taxonomy Id: 6182
Other names: S. japonicum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.