STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EWB00_002768Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16. (977 aa)    
Predicted Functional Partners:
EWB00_002940
Calcium homeostasis endoplasmic reticulum protein.
   
 0.992
EWB00_005295
Pre-mRNA-processing factor 17.
   
 0.975
EWB00_008375
Putative pre-mRNA-splicing factor CWC25 isoform 1.
    
 0.972
EWB00_002623
Pre-mRNA-splicing factor syf2.
    
 0.969
EWB00_004281
Pre-mRNA-splicing factor SLU7.
   
 0.967
EWB00_007401
Serine/arginine repetitive matrix protein isoform 1.
    
 0.961
EWB00_006612
G-patch domain and KOW motifs-containing protein.
   
 0.958
EWB00_006954
U2 small nuclear ribonucleoprotein A' isoform 2.
    
 0.944
EWB00_001673
U1 small nuclear ribonucleoprotein A.
    
 0.943
EWB00_006853
Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 isoform 1.
  
 
0.942
Your Current Organism:
Schistosoma japonicum
NCBI taxonomy Id: 6182
Other names: S. japonicum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.