STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EWB00_001781RNA polymerase II subunit B1 CTD phosphatase Rpap2. (357 aa)    
Predicted Functional Partners:
EWB00_010683
DNA-directed RNA polymerase II subunit RPB7 isoform 4.
    
 0.961
EWB00_000617
DNA-directed RNA polymerase II subunit RPB4 isoform 1.
    
 0.959
EWB00_004852
DNA-directed RNA polymerases RPABC1 isoform 2.
    
 0.957
EWB00_006259
DNA-directed RNA polymerase II subunit RPB11-a.
    
 0.953
EWB00_010224
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.951
EWB00_007564
DNA-directed RNA polymerase II subunit RPB3 isoform 2.
    
 0.949
EWB00_006191
DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.
    
 0.944
EWB00_001522
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
   
 0.944
EWB00_004639
DNA-directed RNA Polymerase II subunit K.
    
 0.922
EWB00_011221
GPN-loop GTPase; Small GTPase required for proper nuclear import of RNA polymerase II (RNAPII). May act at an RNAP assembly step prior to nuclear import.
    
 
 0.863
Your Current Organism:
Schistosoma japonicum
NCBI taxonomy Id: 6182
Other names: S. japonicum
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