A0A5K4F2T2 protein (Schistosoma mansoni) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A5K4F2T2

Uncharacterized protein. (765 aa)

Predicted Functional Partners:

A0A3Q0KJE0

0.832

A0A3Q0KEM2

0.787

A0A3Q0KLK0

0.786

Smp_033670.5

0.778

Smp_002880.1

0.741

Smp_001500

0.700

A0A3Q0KG54

0.673

Smp_039000

0.647

A0A5K4E969

0.642

Smp_082120

0.639

Your Current Organism:

Schistosoma mansoni

NCBI taxonomy Id: 6183
Other names: S. mansoni

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A3Q0KEM2	A0A3Q0KJE0	A0A3Q0KEM2	A0A3Q0KJE0	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Putative 116 kD U5 small nuclear ribonucleoprotein component.	0.460
A0A3Q0KEM2	A0A5K4F2T2	A0A3Q0KEM2	A0A5K4F2T2	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Uncharacterized protein.	0.787
A0A3Q0KEM2	Smp_002880.1	A0A3Q0KEM2	G4VLJ0	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.999
A0A3Q0KEM2	Smp_033670.5	A0A3Q0KEM2	G4LVB6	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase gamma subunit, putative; ATP synthase subunit gamma.	0.999
A0A3Q0KEM2	Smp_039000	A0A3Q0KEM2	G4LWT1	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase delta chain, putative.	0.999
A0A3Q0KEM2	Smp_082120	A0A3Q0KEM2	C4QJA1	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase delta chain, mitochondrial,putative.	0.999
A0A3Q0KG54	A0A5K4F2T2	A0A3Q0KG54	A0A5K4F2T2	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	Uncharacterized protein.	0.673
A0A3Q0KJE0	A0A3Q0KEM2	A0A3Q0KJE0	A0A3Q0KEM2	Putative 116 kD U5 small nuclear ribonucleoprotein component.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.460
A0A3Q0KJE0	A0A3Q0KLK0	A0A3Q0KJE0	A0A3Q0KLK0	Putative 116 kD U5 small nuclear ribonucleoprotein component.	Cell division control protein, putative.	0.993
A0A3Q0KJE0	A0A5K4E969	A0A3Q0KJE0	A0A5K4E969	Putative 116 kD U5 small nuclear ribonucleoprotein component.	Sr-related ctd associated factor.	0.905
A0A3Q0KJE0	A0A5K4F2T2	A0A3Q0KJE0	A0A5K4F2T2	Putative 116 kD U5 small nuclear ribonucleoprotein component.	Uncharacterized protein.	0.832
A0A3Q0KJE0	Smp_002880.1	A0A3Q0KJE0	G4VLJ0	Putative 116 kD U5 small nuclear ribonucleoprotein component.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.845
A0A3Q0KJE0	Smp_033670.5	A0A3Q0KJE0	G4LVB6	Putative 116 kD U5 small nuclear ribonucleoprotein component.	ATP synthase gamma subunit, putative; ATP synthase subunit gamma.	0.801
A0A3Q0KJE0	Smp_039000	A0A3Q0KJE0	G4LWT1	Putative 116 kD U5 small nuclear ribonucleoprotein component.	ATP synthase delta chain, putative.	0.793
A0A3Q0KJE0	Smp_082120	A0A3Q0KJE0	C4QJA1	Putative 116 kD U5 small nuclear ribonucleoprotein component.	ATP synthase delta chain, mitochondrial,putative.	0.500
A0A3Q0KLK0	A0A3Q0KJE0	A0A3Q0KLK0	A0A3Q0KJE0	Cell division control protein, putative.	Putative 116 kD U5 small nuclear ribonucleoprotein component.	0.993
A0A3Q0KLK0	A0A5K4E969	A0A3Q0KLK0	A0A5K4E969	Cell division control protein, putative.	Sr-related ctd associated factor.	0.892
A0A3Q0KLK0	A0A5K4F2T2	A0A3Q0KLK0	A0A5K4F2T2	Cell division control protein, putative.	Uncharacterized protein.	0.786
A0A5K4E969	A0A3Q0KJE0	A0A5K4E969	A0A3Q0KJE0	Sr-related ctd associated factor.	Putative 116 kD U5 small nuclear ribonucleoprotein component.	0.905
A0A5K4E969	A0A3Q0KLK0	A0A5K4E969	A0A3Q0KLK0	Sr-related ctd associated factor.	Cell division control protein, putative.	0.892