DC041_0009668 protein (Schistosoma bovis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DC041_0009668

Uncharacterized protein. (95 aa)

Predicted Functional Partners:

DC041_0005070

0.844

DC041_0000503

0.844

DC041_0003833

0.826

DC041_0010672

0.768

DC041_0011063

0.768

DC041_0010212

0.675

DC041_0000060

0.675

DC041_0010006

0.510

DC041_0001621

0.489

DC041_0001619

0.489

Your Current Organism:

Schistosoma bovis

NCBI taxonomy Id: 6184
Other names: S. bovis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DC041_0000060	DC041_0009668	A0A430Q9F2	A0A430PZ95	Glycoprotein 6-alpha-L-fucosyltransferase; Belongs to the glycosyltransferase 23 family.	Uncharacterized protein.	0.675
DC041_0000060	DC041_0010672	A0A430Q9F2	A0A430PX03	Glycoprotein 6-alpha-L-fucosyltransferase; Belongs to the glycosyltransferase 23 family.	Glycoprotein 6-alpha-L-fucosyltransferase; Belongs to the glycosyltransferase 23 family.	0.883
DC041_0000060	DC041_0011063	A0A430Q9F2	A0A430Q654	Glycoprotein 6-alpha-L-fucosyltransferase; Belongs to the glycosyltransferase 23 family.	Glycoprotein 6-alpha-L-fucosyltransferase; Belongs to the glycosyltransferase 23 family.	0.888
DC041_0000503	DC041_0005070	A0A430QG45	A0A430Q7X0	Beta-hexosaminidase.	Beta-hexosaminidase.	0.955
DC041_0000503	DC041_0009668	A0A430QG45	A0A430PZ95	Beta-hexosaminidase.	Uncharacterized protein.	0.844
DC041_0001619	DC041_0009668	A0A430QDC2	A0A430PZ95	Sphingosine kinase.	Uncharacterized protein.	0.489
DC041_0001621	DC041_0009668	A0A430QDB5	A0A430PZ95	Uncharacterized protein.	Uncharacterized protein.	0.489
DC041_0003833	DC041_0009668	A0A430Q500	A0A430PZ95	Glycoprotein 2-beta-D-xylosyltransferase.	Uncharacterized protein.	0.826
DC041_0005070	DC041_0000503	A0A430Q7X0	A0A430QG45	Beta-hexosaminidase.	Beta-hexosaminidase.	0.955
DC041_0005070	DC041_0009668	A0A430Q7X0	A0A430PZ95	Beta-hexosaminidase.	Uncharacterized protein.	0.844
DC041_0009668	DC041_0000060	A0A430PZ95	A0A430Q9F2	Uncharacterized protein.	Glycoprotein 6-alpha-L-fucosyltransferase; Belongs to the glycosyltransferase 23 family.	0.675
DC041_0009668	DC041_0000503	A0A430PZ95	A0A430QG45	Uncharacterized protein.	Beta-hexosaminidase.	0.844
DC041_0009668	DC041_0001619	A0A430PZ95	A0A430QDC2	Uncharacterized protein.	Sphingosine kinase.	0.489
DC041_0009668	DC041_0001621	A0A430PZ95	A0A430QDB5	Uncharacterized protein.	Uncharacterized protein.	0.489
DC041_0009668	DC041_0003833	A0A430PZ95	A0A430Q500	Uncharacterized protein.	Glycoprotein 2-beta-D-xylosyltransferase.	0.826
DC041_0009668	DC041_0005070	A0A430PZ95	A0A430Q7X0	Uncharacterized protein.	Beta-hexosaminidase.	0.844
DC041_0009668	DC041_0010006	A0A430PZ95	A0A430QIT0	Uncharacterized protein.	Intraflagellar transport protein 20.	0.510
DC041_0009668	DC041_0010212	A0A430PZ95	A0A430Q2B2	Uncharacterized protein.	Glycoprotein 6-alpha-L-fucosyltransferase; Belongs to the glycosyltransferase 23 family.	0.675
DC041_0009668	DC041_0010672	A0A430PZ95	A0A430PX03	Uncharacterized protein.	Glycoprotein 6-alpha-L-fucosyltransferase; Belongs to the glycosyltransferase 23 family.	0.768
DC041_0009668	DC041_0011063	A0A430PZ95	A0A430Q654	Uncharacterized protein.	Glycoprotein 6-alpha-L-fucosyltransferase; Belongs to the glycosyltransferase 23 family.	0.768