STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DC041_0012743Survival of motor neuron-related-splicing factor 30. (121 aa)    
Predicted Functional Partners:
DC041_0002905
Calcium homeostasis endoplasmic reticulum protein.
   
 0.991
DC041_0012250
Pre-mRNA-processing factor 6.
    
 
 0.929
DC041_0004808
Splicing factor 3A subunit 2.
    
  0.827
DC041_0004805
Splicing factor 3A subunit 2.
    
  0.827
DC041_0004930
Splicing factor 3B subunit 1.
   
 0.825
DC041_0000817
U2 small nuclear ribonucleoprotein A.
     
 0.796
DC041_0004733
Small nuclear ribonucleoprotein F.
    
 0.764
DC041_0004246
U2-associated protein SR140.
    
  0.761
KATNB1
Katanin p80 WD40 repeat-containing subunit B1; Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation.
   
 
 0.757
DC041_0004179
PHD finger-like domain-containing protein 5A.
     
 0.747
Your Current Organism:
Schistosoma bovis
NCBI taxonomy Id: 6184
Other names: S. bovis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.