STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YOD1YOD1 deubiquitinase. (348 aa)    
Predicted Functional Partners:
VCP
Valosin containing protein; Belongs to the AAA ATPase family.
   
 0.987
PLAA
Phospholipase A2 activating protein.
    
 
 0.940
SPATA5L1
AAA domain-containing protein.
   
 0.883
SPATA5
Spermatogenesis associated 5.
   
 0.883
ENSNLEP00000034619
Ubiquitin-like domain-containing protein.
    
 
 0.859
ENSNLEP00000025290
Uncharacterized protein.
   
 
 0.823
UFD1
Ubiquitin recognition factor in ER associated degradation 1.
   
 
 0.823
UBXN6
UBX domain protein 6.
    
 
 0.819
UBE4B
Ubiquitination factor E4B.
    
 
 0.815
NPLOC4
NPL4 homolog, ubiquitin recognition factor.
    
 
 0.806
Your Current Organism:
Nomascus leucogenys
NCBI taxonomy Id: 61853
Other names: Hylobates concolor leucogenys, Hylobates concolor leucogyneus, Hylobates leucogenys, Hylobates leucogenys leucogenys, N. leucogenys, Nomascus leucogenys leucogenys, Nomascus leukogenys, White-cheeked Gibbon, northern white-cheeked gibbon
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