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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG9SMG9 nonsense mediated mRNA decay factor. (441 aa)    
Predicted Functional Partners:
SMG1
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
    
 0.999
SMG8
SMG8 nonsense mediated mRNA decay factor.
    
 0.996
ENSNLEP00000041863
SMG1_N domain-containing protein.
    
 0.906
SMG7
SMG7 nonsense mediated mRNA decay factor.
   
 
 0.843
UPF1
UPF1 RNA helicase and ATPase.
    
 
 0.838
SMG6
SMG6 nonsense mediated mRNA decay factor.
   
 
 0.829
SMG5
SMG5 nonsense mediated mRNA decay factor.
   
 
 0.815
UPF2
UPF2 regulator of nonsense mediated mRNA decay.
      
 0.782
RBM8A
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
    
 
 0.757
PRKDC
Protein kinase, DNA-activated, catalytic subunit.
    
 0.749
Your Current Organism:
Nomascus leucogenys
NCBI taxonomy Id: 61853
Other names: Hylobates concolor leucogenys, Hylobates concolor leucogyneus, Hylobates leucogenys, Hylobates leucogenys leucogenys, N. leucogenys, Nomascus leucogenys leucogenys, Nomascus leukogenys, White-cheeked Gibbon, northern white-cheeked gibbon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.