PHF5A protein (Nomascus leucogenys) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PHF5A

Uncharacterized protein. (81 aa)

Predicted Functional Partners:

SF3B3

0.999

SF3B5

0.999

SF3B1

0.999

ENSNLEP00000046159

0.999

SF3B6

0.998

DDX42

0.994

SNRPA1

0.992

SF3B2

0.992

SNRPB2

0.992

U2AF2

0.991

Your Current Organism:

Nomascus leucogenys

NCBI taxonomy Id: 61853
Other names: Hylobates concolor leucogenys, Hylobates concolor leucogyneus, Hylobates leucogenys, Hylobates leucogenys leucogenys, N. leucogenys, Nomascus leucogenys leucogenys, Nomascus leukogenys, White-cheeked Gibbon, northern white-cheeked gibbon

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDX42	ENSNLEP00000046159	ENSNLEP00000005233	ENSNLEP00000046159	DEAD-box helicase 42.	SF3A2 domain-containing protein.	0.990
DDX42	PHF5A	ENSNLEP00000005233	ENSNLEP00000018783	DEAD-box helicase 42.	Uncharacterized protein.	0.994
DDX42	SF3B1	ENSNLEP00000005233	ENSNLEP00000033194	DEAD-box helicase 42.	Splicing factor 3b subunit 1.	0.999
DDX42	SF3B2	ENSNLEP00000005233	ENSNLEP00000007295	DEAD-box helicase 42.	Splicing factor 3b subunit 2.	0.943
DDX42	SF3B3	ENSNLEP00000005233	ENSNLEP00000019568	DEAD-box helicase 42.	Splicing factor 3b subunit 3.	0.998
DDX42	SF3B5	ENSNLEP00000005233	ENSNLEP00000023144	DEAD-box helicase 42.	Splicing factor 3B subunit 5; Belongs to the SF3B5 family.	0.998
DDX42	SF3B6	ENSNLEP00000005233	ENSNLEP00000000957	DEAD-box helicase 42.	RRM domain-containing protein.	0.964
DDX42	SNRPA1	ENSNLEP00000005233	ENSNLEP00000000576	DEAD-box helicase 42.	Small nuclear ribonucleoprotein polypeptide A.	0.527
DDX42	SNRPB2	ENSNLEP00000005233	ENSNLEP00000034700	DEAD-box helicase 42.	Small nuclear ribonucleoprotein polypeptide B2.	0.459
ENSNLEP00000046159	DDX42	ENSNLEP00000046159	ENSNLEP00000005233	SF3A2 domain-containing protein.	DEAD-box helicase 42.	0.990
ENSNLEP00000046159	PHF5A	ENSNLEP00000046159	ENSNLEP00000018783	SF3A2 domain-containing protein.	Uncharacterized protein.	0.999
ENSNLEP00000046159	SF3B1	ENSNLEP00000046159	ENSNLEP00000033194	SF3A2 domain-containing protein.	Splicing factor 3b subunit 1.	0.999
ENSNLEP00000046159	SF3B2	ENSNLEP00000046159	ENSNLEP00000007295	SF3A2 domain-containing protein.	Splicing factor 3b subunit 2.	0.999
ENSNLEP00000046159	SF3B3	ENSNLEP00000046159	ENSNLEP00000019568	SF3A2 domain-containing protein.	Splicing factor 3b subunit 3.	0.999
ENSNLEP00000046159	SF3B5	ENSNLEP00000046159	ENSNLEP00000023144	SF3A2 domain-containing protein.	Splicing factor 3B subunit 5; Belongs to the SF3B5 family.	0.999
ENSNLEP00000046159	SF3B6	ENSNLEP00000046159	ENSNLEP00000000957	SF3A2 domain-containing protein.	RRM domain-containing protein.	0.965
ENSNLEP00000046159	SNRPA1	ENSNLEP00000046159	ENSNLEP00000000576	SF3A2 domain-containing protein.	Small nuclear ribonucleoprotein polypeptide A.	0.979
ENSNLEP00000046159	SNRPB2	ENSNLEP00000046159	ENSNLEP00000034700	SF3A2 domain-containing protein.	Small nuclear ribonucleoprotein polypeptide B2.	0.960
ENSNLEP00000046159	U2AF2	ENSNLEP00000046159	ENSNLEP00000012869	SF3A2 domain-containing protein.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.905
PHF5A	DDX42	ENSNLEP00000018783	ENSNLEP00000005233	Uncharacterized protein.	DEAD-box helicase 42.	0.994

page 1 of 6

Server load: medium (46%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About