SCUD_LOCUS262 protein (Schistosoma curassoni)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

SCUD_LOCUS262

Uncharacterized protein. (843 aa)

Predicted Functional Partners:

SCUD_LOCUS9905

0.972

A0A183KMP5

0.965

A0A183KP56

0.965

SCUD_LOCUS5122

0.952

SCUD_LOCUS9445

0.936

A0A183KQN8

0.935

A0A183L0Y6

0.935

A0A183L6Q5

0.934

A0A183KWM9

0.925

A0A183KCV3

0.924

Your Current Organism:

Schistosoma curassoni

NCBI taxonomy Id: 6186
Other names: S. curassoni

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A183KCV3	A0A183KP56	A0A183KCV3	A0A183KP56	Hcy-binding domain-containing protein.	Uncharacterized protein.	0.970
A0A183KCV3	A0A183KQN8	A0A183KCV3	A0A183KQN8	Hcy-binding domain-containing protein.	Aminotran_1_2 domain-containing protein.	0.616
A0A183KCV3	A0A183KWM9	A0A183KCV3	A0A183KWM9	Hcy-binding domain-containing protein.	PALP domain-containing protein.	0.971
A0A183KCV3	A0A183L0Y6	A0A183KCV3	A0A183L0Y6	Hcy-binding domain-containing protein.	Uncharacterized protein.	0.616
A0A183KCV3	SCUD_LOCUS262	A0A183KCV3	A0A183JC55	Hcy-binding domain-containing protein.	Uncharacterized protein.	0.924
A0A183KCV3	SCUD_LOCUS5122	A0A183KCV3	A0A183JQY3	Hcy-binding domain-containing protein.	Uncharacterized protein.	0.962
A0A183KCV3	SCUD_LOCUS9905	A0A183KCV3	A0A183K4I5	Hcy-binding domain-containing protein.	Aspartate aminotransferase.	0.668
A0A183KMP5	SCUD_LOCUS262	A0A183KMP5	A0A183JC55	Abhydrolase_3 domain-containing protein.	Uncharacterized protein.	0.965
A0A183KP56	A0A183KCV3	A0A183KP56	A0A183KCV3	Uncharacterized protein.	Hcy-binding domain-containing protein.	0.970
A0A183KP56	A0A183KQN8	A0A183KP56	A0A183KQN8	Uncharacterized protein.	Aminotran_1_2 domain-containing protein.	0.902
A0A183KP56	A0A183KWM9	A0A183KP56	A0A183KWM9	Uncharacterized protein.	PALP domain-containing protein.	0.996
A0A183KP56	A0A183L0Y6	A0A183KP56	A0A183L0Y6	Uncharacterized protein.	Uncharacterized protein.	0.902
A0A183KP56	A0A183L6Q5	A0A183KP56	A0A183L6Q5	Uncharacterized protein.	Uncharacterized protein.	0.851
A0A183KP56	SCUD_LOCUS262	A0A183KP56	A0A183JC55	Uncharacterized protein.	Uncharacterized protein.	0.965
A0A183KP56	SCUD_LOCUS9445	A0A183KP56	A0A183K380	Uncharacterized protein.	Cytochrome b5 heme-binding domain-containing protein.	0.639
A0A183KP56	SCUD_LOCUS9905	A0A183KP56	A0A183K4I5	Uncharacterized protein.	Aspartate aminotransferase.	0.940
A0A183KQN8	A0A183KCV3	A0A183KQN8	A0A183KCV3	Aminotran_1_2 domain-containing protein.	Hcy-binding domain-containing protein.	0.616
A0A183KQN8	A0A183KP56	A0A183KQN8	A0A183KP56	Aminotran_1_2 domain-containing protein.	Uncharacterized protein.	0.902
A0A183KQN8	A0A183KWM9	A0A183KQN8	A0A183KWM9	Aminotran_1_2 domain-containing protein.	PALP domain-containing protein.	0.890
A0A183KQN8	A0A183L6Q5	A0A183KQN8	A0A183L6Q5	Aminotran_1_2 domain-containing protein.	Uncharacterized protein.	0.845