SCUD_LOCUS1062 protein (Schistosoma curassoni)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SCUD_LOCUS1062

Uncharacterized protein. (263 aa)

Predicted Functional Partners:

A0A183KVB0

0.870

SCUD_LOCUS4605

0.812

A0A183KQM3

0.797

A0A183KIS9

0.791

SCUD_LOCUS10

0.768

SCUD_LOCUS289

0.758

SCUD_LOCUS797

0.714

SCUD_LOCUS1955

0.709

SCUD_LOCUS765

0.702

A0A183KRE8

0.695

Your Current Organism:

Schistosoma curassoni

NCBI taxonomy Id: 6186
Other names: S. curassoni

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A183KIS9	A0A183KQM3	A0A183KIS9	A0A183KQM3	Protein RFT1 homolog; May be involved in N-linked oligosaccharide assembly. Belongs to the RFT1 family.	Uncharacterized protein.	0.891
A0A183KIS9	A0A183KVB0	A0A183KIS9	A0A183KVB0	Protein RFT1 homolog; May be involved in N-linked oligosaccharide assembly. Belongs to the RFT1 family.	Homeobox domain-containing protein.	0.422
A0A183KIS9	SCUD_LOCUS1062	A0A183KIS9	A0A183JEE9	Protein RFT1 homolog; May be involved in N-linked oligosaccharide assembly. Belongs to the RFT1 family.	Uncharacterized protein.	0.791
A0A183KIS9	SCUD_LOCUS289	A0A183KIS9	A0A183JC82	Protein RFT1 homolog; May be involved in N-linked oligosaccharide assembly. Belongs to the RFT1 family.	LID domain-containing protein.	0.998
A0A183KIS9	SCUD_LOCUS765	A0A183KIS9	A0A183JDK2	Protein RFT1 homolog; May be involved in N-linked oligosaccharide assembly. Belongs to the RFT1 family.	GATA-type domain-containing protein.	0.866
A0A183KQM3	A0A183KIS9	A0A183KQM3	A0A183KIS9	Uncharacterized protein.	Protein RFT1 homolog; May be involved in N-linked oligosaccharide assembly. Belongs to the RFT1 family.	0.891
A0A183KQM3	A0A183KRE8	A0A183KQM3	A0A183KRE8	Uncharacterized protein.	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family.	0.921
A0A183KQM3	A0A183KVB0	A0A183KQM3	A0A183KVB0	Uncharacterized protein.	Homeobox domain-containing protein.	0.509
A0A183KQM3	SCUD_LOCUS1062	A0A183KQM3	A0A183JEE9	Uncharacterized protein.	Uncharacterized protein.	0.797
A0A183KQM3	SCUD_LOCUS289	A0A183KQM3	A0A183JC82	Uncharacterized protein.	LID domain-containing protein.	0.807
A0A183KQM3	SCUD_LOCUS765	A0A183KQM3	A0A183JDK2	Uncharacterized protein.	GATA-type domain-containing protein.	0.862
A0A183KRE8	A0A183KQM3	A0A183KRE8	A0A183KQM3	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family.	Uncharacterized protein.	0.921
A0A183KRE8	SCUD_LOCUS10	A0A183KRE8	A0A183JBF5	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family.	Fork-head domain-containing protein.	0.692
A0A183KRE8	SCUD_LOCUS1062	A0A183KRE8	A0A183JEE9	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family.	Uncharacterized protein.	0.695
A0A183KRE8	SCUD_LOCUS1955	A0A183KRE8	A0A183JGY2	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family.	Fork-head domain-containing protein.	0.677
A0A183KRE8	SCUD_LOCUS765	A0A183KRE8	A0A183JDK2	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family.	GATA-type domain-containing protein.	0.701
A0A183KVB0	A0A183KIS9	A0A183KVB0	A0A183KIS9	Homeobox domain-containing protein.	Protein RFT1 homolog; May be involved in N-linked oligosaccharide assembly. Belongs to the RFT1 family.	0.422
A0A183KVB0	A0A183KQM3	A0A183KVB0	A0A183KQM3	Homeobox domain-containing protein.	Uncharacterized protein.	0.509
A0A183KVB0	SCUD_LOCUS10	A0A183KVB0	A0A183JBF5	Homeobox domain-containing protein.	Fork-head domain-containing protein.	0.589
A0A183KVB0	SCUD_LOCUS1062	A0A183KVB0	A0A183JEE9	Homeobox domain-containing protein.	Uncharacterized protein.	0.870