SCUD_LOCUS4655 protein (Schistosoma curassoni)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SCUD_LOCUS4655

SprT-like domain-containing protein. (180 aa)

Predicted Functional Partners:

SCUD_LOCUS6981

0.800

SCUD_LOCUS8242

0.797

SCUD_LOCUS7100

0.790

SCUD_LOCUS7597

0.790

SCUD_LOCUS8536

0.790

A0A183K648

0.790

A0A183KNF0

0.761

A0A183KBE2

0.662

A0A183KET4

0.613

A0A183L1E2

0.613

Your Current Organism:

Schistosoma curassoni

NCBI taxonomy Id: 6186
Other names: S. curassoni

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A183K648	A0A183KBE2	A0A183K648	A0A183KBE2	Uncharacterized protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.974
A0A183K648	A0A183KET4	A0A183K648	A0A183KET4	Uncharacterized protein.	Uncharacterized protein.	0.553
A0A183K648	A0A183KNF0	A0A183K648	A0A183KNF0	Uncharacterized protein.	CN hydrolase domain-containing protein.	0.785
A0A183K648	A0A183L1E2	A0A183K648	A0A183L1E2	Uncharacterized protein.	Uncharacterized protein.	0.553
A0A183K648	SCUD_LOCUS4655	A0A183K648	A0A183JPL8	Uncharacterized protein.	SprT-like domain-containing protein.	0.790
A0A183K648	SCUD_LOCUS6981	A0A183K648	A0A183JW86	Uncharacterized protein.	Uncharacterized protein.	0.809
A0A183K648	SCUD_LOCUS7597	A0A183K648	A0A183JXZ9	Uncharacterized protein.	Uncharacterized protein.	0.583
A0A183K648	SCUD_LOCUS8242	A0A183K648	A0A183JZT4	Uncharacterized protein.	HIT domain-containing protein.	0.812
A0A183K648	SCUD_LOCUS8536	A0A183K648	A0A183K0M5	Uncharacterized protein.	Uncharacterized protein.	0.943
A0A183KBE2	A0A183K648	A0A183KBE2	A0A183K648	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	Uncharacterized protein.	0.974
A0A183KBE2	A0A183KET4	A0A183KBE2	A0A183KET4	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	Uncharacterized protein.	0.718
A0A183KBE2	A0A183KNF0	A0A183KBE2	A0A183KNF0	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	CN hydrolase domain-containing protein.	0.676
A0A183KBE2	A0A183L1E2	A0A183KBE2	A0A183L1E2	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	Uncharacterized protein.	0.718
A0A183KBE2	SCUD_LOCUS4655	A0A183KBE2	A0A183JPL8	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	SprT-like domain-containing protein.	0.662
A0A183KBE2	SCUD_LOCUS6981	A0A183KBE2	A0A183JW86	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	Uncharacterized protein.	0.997
A0A183KBE2	SCUD_LOCUS7100	A0A183KBE2	A0A183JWK5	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	Uncharacterized protein.	0.974
A0A183KBE2	SCUD_LOCUS7597	A0A183KBE2	A0A183JXZ9	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	Uncharacterized protein.	0.974
A0A183KBE2	SCUD_LOCUS8242	A0A183KBE2	A0A183JZT4	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	HIT domain-containing protein.	0.711
A0A183KBE2	SCUD_LOCUS8536	A0A183KBE2	A0A183K0M5	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	Uncharacterized protein.	0.996
A0A183KET4	A0A183K648	A0A183KET4	A0A183K648	Uncharacterized protein.	Uncharacterized protein.	0.553