SCUD_LOCUS5420 protein (Schistosoma curassoni)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SCUD_LOCUS5420

Alpha-carbonic anhydrase domain-containing protein; Belongs to the alpha-carbonic anhydrase family. (110 aa)

Predicted Functional Partners:

A0A183K6Z8

0.942

A0A183KF40

0.838

A0A183KLV0

0.729

SCUD_LOCUS2159

0.680

SCUD_LOCUS8360

0.664

SCUD_LOCUS1265

0.661

A0A183KJU6

0.573

A0A183KGV7

0.547

SCUD_LOCUS5821

0.520

A0A183KW16

0.520

Your Current Organism:

Schistosoma curassoni

NCBI taxonomy Id: 6186
Other names: S. curassoni

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A183K6Z8	SCUD_LOCUS5420	A0A183K6Z8	A0A183JRT1	Carbonic anhydrase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.	Alpha-carbonic anhydrase domain-containing protein; Belongs to the alpha-carbonic anhydrase family.	0.942
A0A183KF40	A0A183KJU6	A0A183KF40	A0A183KJU6	Ribosomal_L18_c domain-containing protein.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.980
A0A183KF40	A0A183KLV0	A0A183KF40	A0A183KLV0	Ribosomal_L18_c domain-containing protein.	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	0.974
A0A183KF40	A0A183KW16	A0A183KF40	A0A183KW16	Ribosomal_L18_c domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.542
A0A183KF40	SCUD_LOCUS1265	A0A183KF40	A0A183JF01	Ribosomal_L18_c domain-containing protein.	Uncharacterized protein.	0.999
A0A183KF40	SCUD_LOCUS5420	A0A183KF40	A0A183JRT1	Ribosomal_L18_c domain-containing protein.	Alpha-carbonic anhydrase domain-containing protein; Belongs to the alpha-carbonic anhydrase family.	0.838
A0A183KF40	SCUD_LOCUS5821	A0A183KF40	A0A183JSY0	Ribosomal_L18_c domain-containing protein.	CAF1C_H4-bd domain-containing protein.	0.542
A0A183KF40	SCUD_LOCUS8360	A0A183KF40	A0A183K051	Ribosomal_L18_c domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family.	0.999
A0A183KGV7	A0A183KJU6	A0A183KGV7	A0A183KJU6	CPL domain-containing protein.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.999
A0A183KGV7	A0A183KLV0	A0A183KGV7	A0A183KLV0	CPL domain-containing protein.	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	0.987
A0A183KGV7	A0A183KW16	A0A183KGV7	A0A183KW16	CPL domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.903
A0A183KGV7	SCUD_LOCUS2159	A0A183KGV7	A0A183JHI6	CPL domain-containing protein.	Brix domain-containing protein.	0.984
A0A183KGV7	SCUD_LOCUS5420	A0A183KGV7	A0A183JRT1	CPL domain-containing protein.	Alpha-carbonic anhydrase domain-containing protein; Belongs to the alpha-carbonic anhydrase family.	0.547
A0A183KGV7	SCUD_LOCUS5821	A0A183KGV7	A0A183JSY0	CPL domain-containing protein.	CAF1C_H4-bd domain-containing protein.	0.903
A0A183KJU6	A0A183KF40	A0A183KJU6	A0A183KF40	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	Ribosomal_L18_c domain-containing protein.	0.980
A0A183KJU6	A0A183KGV7	A0A183KJU6	A0A183KGV7	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	CPL domain-containing protein.	0.999
A0A183KJU6	A0A183KLV0	A0A183KJU6	A0A183KLV0	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	0.996
A0A183KJU6	A0A183KW16	A0A183KJU6	A0A183KW16	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	WD_REPEATS_REGION domain-containing protein.	0.889
A0A183KJU6	SCUD_LOCUS1265	A0A183KJU6	A0A183JF01	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	Uncharacterized protein.	0.938
A0A183KJU6	SCUD_LOCUS2159	A0A183KJU6	A0A183JHI6	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	Brix domain-containing protein.	0.988