A0A183L0S4 protein (Schistosoma curassoni) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A183L0S4

Helicase ATP-binding domain-containing protein. (294 aa)

Predicted Functional Partners:

SCUD_LOCUS5401

0.858

A0A183KMG3

0.835

SCUD_LOCUS9361

0.809

A0A183KEQ6

0.800

A0A183KGG2

0.733

A0A183L1J0

0.658

SCUD_LOCUS4494

0.651

SCUD_LOCUS5060

0.648

A0A183KDD3

0.648

A0A183L247

0.648

Your Current Organism:

Schistosoma curassoni

NCBI taxonomy Id: 6186
Other names: S. curassoni

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A183KDD3	A0A183KEQ6	A0A183KDD3	A0A183KEQ6	Uncharacterized protein.	POLAc domain-containing protein.	0.648
A0A183KDD3	A0A183KGG2	A0A183KDD3	A0A183KGG2	Uncharacterized protein.	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	0.443
A0A183KDD3	A0A183KMG3	A0A183KDD3	A0A183KMG3	Uncharacterized protein.	Uncharacterized protein.	0.993
A0A183KDD3	A0A183L0S4	A0A183KDD3	A0A183L0S4	Uncharacterized protein.	Helicase ATP-binding domain-containing protein.	0.648
A0A183KDD3	SCUD_LOCUS9361	A0A183KDD3	A0A183K2Z6	Uncharacterized protein.	XPGI domain-containing protein.	0.497
A0A183KEQ6	A0A183KDD3	A0A183KEQ6	A0A183KDD3	POLAc domain-containing protein.	Uncharacterized protein.	0.648
A0A183KEQ6	A0A183KGG2	A0A183KEQ6	A0A183KGG2	POLAc domain-containing protein.	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	0.733
A0A183KEQ6	A0A183KMG3	A0A183KEQ6	A0A183KMG3	POLAc domain-containing protein.	Uncharacterized protein.	0.835
A0A183KEQ6	A0A183L0S4	A0A183KEQ6	A0A183L0S4	POLAc domain-containing protein.	Helicase ATP-binding domain-containing protein.	0.800
A0A183KEQ6	A0A183L1J0	A0A183KEQ6	A0A183L1J0	POLAc domain-containing protein.	SF4 helicase domain-containing protein.	0.658
A0A183KEQ6	A0A183L247	A0A183KEQ6	A0A183L247	POLAc domain-containing protein.	Uncharacterized protein.	0.648
A0A183KEQ6	SCUD_LOCUS4494	A0A183KEQ6	A0A183JP58	POLAc domain-containing protein.	RNase H domain-containing protein.	0.651
A0A183KEQ6	SCUD_LOCUS5060	A0A183KEQ6	A0A183JQS2	POLAc domain-containing protein.	Uncharacterized protein.	0.648
A0A183KEQ6	SCUD_LOCUS5401	A0A183KEQ6	A0A183JRR2	POLAc domain-containing protein.	XPGN domain-containing protein.	0.769
A0A183KEQ6	SCUD_LOCUS9361	A0A183KEQ6	A0A183K2Z6	POLAc domain-containing protein.	XPGI domain-containing protein.	0.691
A0A183KGG2	A0A183KDD3	A0A183KGG2	A0A183KDD3	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	Uncharacterized protein.	0.443
A0A183KGG2	A0A183KEQ6	A0A183KGG2	A0A183KEQ6	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	POLAc domain-containing protein.	0.733
A0A183KGG2	A0A183KMG3	A0A183KGG2	A0A183KMG3	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	Uncharacterized protein.	0.846
A0A183KGG2	A0A183L0S4	A0A183KGG2	A0A183L0S4	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	Helicase ATP-binding domain-containing protein.	0.733
A0A183KGG2	A0A183L247	A0A183KGG2	A0A183L247	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	Uncharacterized protein.	0.443