Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SIS42319.1 | SIS42328.1 | SAMN05421760_101360 | SAMN05421760_101361 | Outer membrane transport energization protein ExbB. | Biopolymer transport protein ExbD. | 0.989 |
SIS42319.1 | SIS42334.1 | SAMN05421760_101360 | SAMN05421760_101362 | Outer membrane transport energization protein ExbB. | Outer membrane transport energization protein ExbD. | 0.987 |
SIS42319.1 | SIS42342.1 | SAMN05421760_101360 | SAMN05421760_101363 | Outer membrane transport energization protein ExbB. | Outer membrane transport energization protein TonB. | 0.972 |
SIS42319.1 | SIS43136.1 | SAMN05421760_101360 | SAMN05421760_101463 | Outer membrane transport energization protein ExbB. | Protein TonB. | 0.767 |
SIS42319.1 | SIS58810.1 | SAMN05421760_101360 | SAMN05421760_102306 | Outer membrane transport energization protein ExbB. | Cell division and transport-associated protein TolA. | 0.721 |
SIS42319.1 | SIT04502.1 | SAMN05421760_101360 | SAMN05421760_11240 | Outer membrane transport energization protein ExbB. | Outer membrane receptor proteins, mostly Fe transport. | 0.457 |
SIS42319.1 | SIT11500.1 | SAMN05421760_101360 | SAMN05421760_11636 | Outer membrane transport energization protein ExbB. | TonB family C-terminal domain-containing protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | 0.724 |
SIS42319.1 | ribB | SAMN05421760_101360 | SAMN05421760_101562 | Outer membrane transport energization protein ExbB. | 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family. | 0.506 |
SIS42328.1 | SIS42319.1 | SAMN05421760_101361 | SAMN05421760_101360 | Biopolymer transport protein ExbD. | Outer membrane transport energization protein ExbB. | 0.989 |
SIS42328.1 | SIS42334.1 | SAMN05421760_101361 | SAMN05421760_101362 | Biopolymer transport protein ExbD. | Outer membrane transport energization protein ExbD. | 0.958 |
SIS42328.1 | SIS42342.1 | SAMN05421760_101361 | SAMN05421760_101363 | Biopolymer transport protein ExbD. | Outer membrane transport energization protein TonB. | 0.972 |
SIS42328.1 | SIS43136.1 | SAMN05421760_101361 | SAMN05421760_101463 | Biopolymer transport protein ExbD. | Protein TonB. | 0.784 |
SIS42328.1 | SIS58810.1 | SAMN05421760_101361 | SAMN05421760_102306 | Biopolymer transport protein ExbD. | Cell division and transport-associated protein TolA. | 0.792 |
SIS42328.1 | SIS76160.1 | SAMN05421760_101361 | SAMN05421760_104254 | Biopolymer transport protein ExbD. | Biopolymer transport protein ExbB. | 0.852 |
SIS42328.1 | SIT04502.1 | SAMN05421760_101361 | SAMN05421760_11240 | Biopolymer transport protein ExbD. | Outer membrane receptor proteins, mostly Fe transport. | 0.643 |
SIS42328.1 | SIT11500.1 | SAMN05421760_101361 | SAMN05421760_11636 | Biopolymer transport protein ExbD. | TonB family C-terminal domain-containing protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | 0.814 |
SIS42328.1 | ribB | SAMN05421760_101361 | SAMN05421760_101562 | Biopolymer transport protein ExbD. | 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family. | 0.623 |
SIS42328.1 | tolQ | SAMN05421760_101361 | SAMN05421760_102308 | Biopolymer transport protein ExbD. | Cell division and transport-associated protein TolQ; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. | 0.815 |
SIS42334.1 | SIS42319.1 | SAMN05421760_101362 | SAMN05421760_101360 | Outer membrane transport energization protein ExbD. | Outer membrane transport energization protein ExbB. | 0.987 |
SIS42334.1 | SIS42328.1 | SAMN05421760_101362 | SAMN05421760_101361 | Outer membrane transport energization protein ExbD. | Biopolymer transport protein ExbD. | 0.958 |
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